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--- publications:publications [2025/01/08 11:51] – Tim
+++ publications:publications [2025/01/11 18:25] (current) – [2022] wkurth
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 work in progress !
+===== Articles =====
-===== 2016 =====
+==== 2022 ====
-**Kurth W., and Y. Ong. (2016).** A design pattern in XL for implementing multiscale models, demonstrated at a fruit tree simulator. Acta Horticulturae (accepted).
+**Chi F., Streit K., Tavkhelidze A., and W. Kurth (2022).** Reconstruction of phyllotaxis at the example of digitized red mangrove (Rhizophora mangle) and application to light interception simulation. in silico Plants 4 (1): diac002.  https://academic.oup.com/insilicoplants/article/4/1/diac002/6535671
-**Evers J.B., and L. Bastiaans. (2016).** Quantifying the effect of crop spatial arrangement on weed suppression using functional-structural plant modelling. Journal of Plant Research 129: 339–351.
+==== 2020 ====
-**Henke M., Kurth W., and G. Buck-Sorlin. (2016).** FSPM-P: Towards a general Functional-Structural Plant Model for efficient model development. Frontiers of Computer Science, 1-15. http://dx.doi.org/10.1007/s11704-015-4472-8
+**Kurth W. (2020).** Multiscale graph grammars can generate Cayley graphs of groups and monoids. In: F. Gadducci, T. Kehrer (eds.): Graph Transformation. 13th International Conference, ICGT 2020, June 25-26, Lecture Notes in Computer Science 12150, Springer Nature Switzerland, pp. 307-315.  https://link.springer.com/chapter/10.1007/978-3-030-51372-6_18
+==== 2019 ====
-===== 2015 =====
+**Fabrika M., Scheer L., Sedmák R., Kurth W., and M. Schön (2019).** Crown architecture and structural development of young Norway spruce trees (Picea abies Karst.): A basis for more realistic growth modelling. BioResources 14 (1): 908-921.
+==== 2018 ====
-**Zhu J., Van der Werf W., Anten N.P.R., Vos J., and J.B. Evers. (2015).** The contribution of phenotypic plasticity to complementary light capture in plant mixtures. New Phytologist 207: 1213–1222.
+**Henke M., and G.H. Buck-Sorlin (2018).** Using a full spectral raytracer for calculating light microclimate in functional-structural plant modelling. Computing and Informatics 36 (6): 1492-1522.
-**Utama D.N., Ong Y., Streit K., and W. Kurth. (2015).** Determining the influence of plant architecture on light interception of virtual rice plants on the simulation platform GroIMP. In: A. N. M. Roseli, T. F. Ying, N. Osman et al. (eds.), Enhancing Strategic Plant Physiological Research and Technologies for Sustainable Resources. Proceedings of the International Conference on Plant Physiology, Bali, Indonesia, 26-28 August 2014, Malaysian Society of Plant Physiology / Indonesian Coffee and Cocoa Research Institute. ISBN 978-967-10840-4-5: 92-101.
+**Long Q., Kurth W., Pradal C., Migault V., and B. Pallas (2018).** An architecture for the integration of different functional and structural plant models. In: Proceedings of the 7th Internat. Conf. on Informatics, Environment, Energy and Applications IEEA 2018, 28-31 March 2018, Beijing, China, ACM Press, Beijing 2018, ISBN 978-1-4503-6362-4, pp. 107-113.
-http://mspp.org.my/files/FullPapers_TransactionMSPPVol23.pdf
+**Merklein J., Poirier-Pocovi M., Buck-Sorlin G., Kurth W., and Q. Long (2018).** A dynamic model of xylem and phloem flux in an apple branch. In: 6th Internat. Symposium on Plant Growth Modeling, Simulation, Visualization and Applications PMA 2018, 4-8 Nov. 2018, Hefei, China. IEEE, pp. 50-55.
-===== 2014 =====
+==== 2017 ====
+**Henke M., Kniemeyer O., and W. Kurth (2017).** Realization and extension of the Xfrog approach for plant modelling in the graph-grammar based language XL. Computing and Informatics 36 (1): 33-54.
+**Kurth W., and Y. Ong (2017).** A design pattern in XL for implementing multiscale models, demonstrated at a fruit tree simulator. Proceedings X Int. Symp. on Modelling in Fruit Research and Orchard Management, Acta Horticulturae 1160: 35-41.
+**Long Q., and W. Kurth (2017).** A logical data exchange model for adapting different methods abstracting plant architecture. In: 2017 2nd International Conference on Knowledge Engineering and Applications ICKEA 2017, Oct. 21-23, 2017, Imperial College London, UK (IEEE 2017), ISBN 978-1-5386-2149-3, pp. 39-43.
+==== 2016 ====
+**Chi F., Kurth W., and K. Streit (2016).** Generating 3D models from a single 2D digitized photo using GIS and GroIMP. In: Proceedings 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 7-11 Nov. 2016, Qingdao (China), IEEE Press, Beijing 2016, 22-27.
+**Evers J.B., and L. Bastiaans (2016).** Quantifying the effect of crop spatial arrangement on weed suppression using functional-structural plant modelling. Journal of Plant Research 129: 339–351.
+**Henke M., Kurth W., and G. Buck-Sorlin (2016).** FSPM-P: Towards a general Functional-Structural Plant Model for efficient model development. Frontiers of Computer Science 10: 1103-1117. http://dx.doi.org/10.1007/s11704-015-4472-8
+**Streit K., Henke M., Bayol B., Cournède P.-H., Sievänen R., and W. Kurth (2016).** Impact of geometrical traits on light interception in conifers: analysis using an FSPM for Scots pine. In: Proceedings 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), 7-11 Nov. 2016, Qingdao (China), IEEE Press, Beijing 2016, 194-203.
+==== 2015 ====
+**Zhu J., Van der Werf W., Anten N.P.R., Vos J., and J.B. Evers (2015).** The contribution of phenotypic plasticity to complementary light capture in plant mixtures. New Phytologist 207: 1213–1222.
+**Utama D.N., Ong Y., Streit K., and W. Kurth (2015).** Determining the influence of plant architecture on light interception of virtual rice plants on the simulation platform GroIMP. In: A. N. M. Roseli, T. F. Ying, N. Osman et al. (eds.), Enhancing Strategic Plant Physiological Research and Technologies for Sustainable Resources. Proceedings of the International Conference on Plant Physiology, Bali, Indonesia, 26-28 August 2014, Malaysian Society of Plant Physiology / Indonesian Coffee and Cocoa Research Institute. ISBN 978-967-10840-4-5: 92-101.
+http://mspp.org.my/files/FullPapers_TransactionMSPPVol23.pdf
+==== 2014 ====
 **Bongers F.J., Evers J.B., Anten N.P.R., and R. Pierik (2014).** From shade avoidance responses to plant performance at vegetation level: using virtual plant modelling as a tool. New Phytologist 204: 268–272.
 **Gu S., Evers J.B., Zhang L., Mao L., Zhang S., Zhao X., Liu S., Van der Werf W., and Z. Li. (2014).** Modelling the structural response of cotton plants to mepiquat chloride and population density. Annals of Botany 114: 877–887.
-**Henke M., Kniemeyer O., and W. Kurth.** Realization and extension of the Xfrog approach for plant modelling in the graph-grammar based language XL. Computing and Informatics (In press).
 **Wang X., Zhang L., Evers J.B., Mao L., Wei S., Pan X., Zhao X., van der Werf W., and Z. Li. (2014).** Predicting the effects of environment and management on cotton fibre growth and quality: a functional-structural plant modelling approach. AoB PLANTS 6: plu040–plu040.
@@ Line 44: / Line 73: @@
-===== 2013 =====
+==== 2013 ====
 **Hemmerling R., Evers J.B., Smolenova K., Buck-Sorlin G., and W. Kurth (2013).** Extension of the GroIMP modelling platform to allow easy specification of differential equations describing biological processes within plant models. Computers and Electronics in Agriculture 92: 1-8.
@@ Line 62: / Line 90: @@
+==== 2012 ====
-===== 2012 =====
 **Kurth W., Kniemeyer O., and B. Sloboda. (2012).** Forest structure, competition and plant-herbivore interaction modelled with relational growth grammars. Lesnícky časopis – Forestry Journal, 58 (2): 75-91.
@@ Line 82: / Line 108: @@
-===== 2011 =====
+==== 2011 ====
 **Xu L., Henke M., Zhu J., Kurth W., and G. Buck-Sorlin. (2011).** A functional–structural model of rice linking quantitative genetic information with morphological development and physiological processes. Annals of Botany 107(5): 817–828.
@@ Line 90: / Line 116: @@
 **Kurth W., and D. Lanwert. (2011).** Grammar-based models and fractals. In: Jopp F., Reuter H., and Breckling B. (Hg.). Springer Verlag. Heidelberg: 147-161.
-===== 2010 =====
+==== 2010 ====
 **Smolenová K., Buck-Sorlin G., Hemmerling R., and W. Kurth. (2010).** Extension of a functional-structural model of barley for modelling of carbon and nitrogen partitioning. In: T. DeJong, and D. Da Silva (eds.), Proceedings of the 6th International Workshop on Functional-Structural Plant Models (FSPM10), Davis, California, USA. 12-17 September, 2010. University of California, 27-29.
@@ Line 106: / Line 131: @@
-===== 2008 =====
+==== 2008 ====
 **Smoleňová, K., and R. Hemmerling. (2008).** Growing virtual plants for virtual worlds. In: SCCG ’08: Proceedings of the Spring Conference on Computer Graphics, K. Myszkowski (Hrsg.), 77–84.
@@ Line 124: / Line 149: @@
 **Buck-Sorlin G., Kniemeyer O., and W. Kurth (2008).** A model of poplar (Populus sp.) physiology and morphology based on Relational Growth Grammars. In: Mathematical Modeling of Biological Systems, Vol. II. Proceedings of ECMTB05, Dresden, Germany. A. Deutsch, R. Bravo de la Parra, R. J. de Boer, O. Diekmann, P. Jagers, E. Kisdi, M. Kretzschmar, P. Lansky, and H. M. Birkhäuser (eds.), Boston / Basel / Berlin, 313–322.
-===== 2007 =====
+==== 2007 ====
 **Kurth W. (2007).** Specification of morphological models with L-systems and Relational Growth Grammars. Image – Journal of Interdisciplinary Image Science, Vol. 5 / Special Issue.
@@ Line 132: / Line 157: @@
 **Buck-Sorlin G., Kniemeyer O., and W. Kurth. (2007).** A grammar-based model of barley including virtual breeding, genetic control and a hormonal metabolic network. In: Functional-Structural Plant Modelling in Crop Production, J. Vos, L. F. M. Marcelis, P. H. B. deVisser, P. C. Struik, and J. B. Evers (eds.). Proceedings of a workshop held in Wageningen, Netherlands. 5-8 March 2006. Springer, Berlin, 243–252.
-===== 2006 =====
+==== 2006 ====
 **Buck-Sorlin G., Kniemeyer O., and W. Kurth (2006).** Physiologie und Morphologie der Pappel (Populus sp.) modelliert mit Relationalen Wachstumsgrammatiken. In: U. Wunn (ed.), DVFFA Sektion Forstliche Biometrie und Informatik, 17. Tagung, Freiburg, Deutschland, 26.-28 September 2005. Die Grüne Reihe (ISSN 1860-4064): 1-11.
@@ Line 140: / Line 165: @@
 Buck-Sorlin G., Hemmerling R., Kniemeyer O., Burema B., and W. Kurth (2006).** New rule-based modelling methods for radiation and object avoidance in virtual plant canopies. In: Proceedings of the Second International Symposium on Plant Growth Modeling, Simulation and Visualization, Beijing, China, 13-17 November, 2006.
-===== 2005 =====
+==== 2005 ====
-**
+**Buck-Sorlin G., Kniemeyer O., and W. Kurth (2005).** Barley morphology, genetics and hormonal regulation of internode elongation modelled by a Relational Growth Grammar. New Phytologist, 166: 859-867.
-Buck-Sorlin G., Kniemeyer O., and W. Kurth (2005).** Barley morphology, genetics and hormonal regulation of internode elongation modelled by a Relational Growth Grammar. New Phytologist, 166: 859-867.
 **Kurth W., Kniemeyer O., and G. Buck-Sorlin (2005).** Relational Growth Grammars – A Graph Rewriting Approach to Dynamical Systems with a Dynamical Structure. In: J.-P. Banatre, P. Fradet, J.-L. Giavitto, and O. Michel (eds.), Unconventional Programming Paradigms. International Workshop UPP2004, Le Mont Saint Michel, France, 15-17 September, 2004, Revised Selected and Invited Papers, Lecture Notes in Computer Science, Vol. 3566, Springer Verlag, Berlin, Heidelberg, 56-72.
-===== 2004 =====
+==== 2004 ====
 **Kniemeyer O. (2004).** Rule-based modelling with the XL/GroIMP software. In: H. Schaub, F. Detje, and U. Brüggemann (eds.), The Logic of Artificial Life. Proceedings of 6th GWAL, Bamberg, Germany, 14-16 April, 2004, AKA Akademische Verlagsgesellschaft Berlin, 56-65. http://wwwuser.gwdg.de/%7Egroimp/grogra.de/publications/gwal6.pdf  and  [ps.gz, 334.4 kB]
@@ Line 153: / Line 177: @@
 **Kniemeyer O., Buck-Sorlin G., and W. Kurth (2004).** A graph grammar approach to Artificial Life. Artificial Life, 10: 413-431.
-===== 2003 =====
+==== 2003 ====
 **Kniemeyer O, Buck-Sorlin G., and W. Kurth (2003).** Representation of genotype and phenotype in a coherent framework based on extended L-systems. In: W. Banzhaf, T. Christaller, P. Dittrich, J.T. Kim, and J. Ziegler (eds.), Advances in Artificial Life – Proceedings of the 7th European Conference on Artificial Life (ECAL). Lecture Notes in Artificial Intelligence, Vol. 2801, Springer Verlag, Berlin, Heidelberg, 625-634. http://www.uni-forst.gwdg.de/~wkurth/cb/html/ecal2003.pdf
-===== 2000 =====
+==== 2000 ====
 **Kurth W. (2000).** Towards universality of growth grammars: Models of Bell, Pagès, and Takenaka revisited. Annals of Forest Science, 57: 543-554. http://wwwuser.gwdg.de/%7Egroimp/grogra.de/publications/unigro.pdf
-===== 1998 =====
+==== 1998 ====
 **Kurth W. (1998).** Some new formalisms for modelling the interactions between plant architecture, competition and carbon allocation. Bayreuther Forum Ökologie, 52: 53-98. http://www.uni-forst.gwdg.de/~wkurth/cb/html/form.ps.gz
+==== 1994 ====
-===== 1994 =====
 **Kurth W. (1994).** Growth Grammar Interpreter GROGRA 2.4: A software tool for the 3-dimensional interpretation of stochastic, sensitive growth grammars in the context of plant modelling. Introduction and Reference Manual. Berichte des Forschungszentrums Waldökosysteme der Universität Göttingen, Ser. B, Vol. 38. http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.37.968&rep=rep1&type=pdf
+===== Dissertations =====
+==== 2019 ====
+**Stiehm Ch. (2019).** Interconnection of a Forest Growth Model and a Structural Model for Young Poplar Trees (Populus spp.). Ph.D. thesis, University of Göttingen, Germany.  https://ediss.uni-goettingen.de/bitstream/handle/21.11130/00-1735-0000-0005-1364-5/Diss.pdf?sequence=1
+**Long Q. (2019).** The Integration of Different Functional and Structural Plant Models. Ph.D. thesis, University of Göttingen, Germany.
+==== 2015 ====
+**Yongzhi O. (2015).** Extension of the Rule-Based Programming Language XL by Concepts for Multi-Scaled Modelling and Level-of-Detail Visualization. Doctoral Thesis, University of Göttingen, Germany.  http://ediss.uni-goettingen.de/handle/11858/00-1735-0000-0022-5FC5-B
+==== 2012 ====
+**Hemmerling R. (2012).** Extending the Programming Language XL to Combine Graph Structures with Ordinary Differential Equations. Doctoral Thesis, University of Göttingen, Germany.  http://webdoc.sub.gwdg.de/diss/2012/hemmerling/
+==== 2008 ====
+**Kniemeyer O. (2008).** Design and Implementation of a Graph Grammar Based Language for Functional-Structural Plant Modelling. Doctoral Thesis, Technische Universität Cottbus, Germany.  http://opus.kobv.de/btu/volltexte/2009/593/pdf/thesis.pdf
+===== Presentations =====
+==== 2004 ====
+**Kniemeyer O. (2004).** Rule-based modelling with the XL/GroIMP software, Presentation at the “6th German Workshop on Artificial Life” (GWAL6), 14-16 April 2004, Bamberg, Germany. http://wwwuser.gwdg.de/%7Egroimp/grogra.de/publications/gwal6_pres.pdf
+**Kniemeyer O. (2004).** Demonstration of the GroIMP software, Presentation at the “4th International Workshop on Functional-Structural Plant Models” (FSPM04), 07-11 June 2004, Montpellier, France.  http://wwwuser.gwdg.de/%7Egroimp/grogra.de/publications/fspm04_ok_pres.pdf
+===== Posters =====
+==== 2013 ====
+**Smolenová K., Henke M., Ong Y., and W. Kurth (2013).** Rule-based integration of LIGNUM into GroIMP. Poster on the 7th International Conference on Functional-Structural Plant Models (FSPM13), Saariselkä (Finland), 9.-14. 6. 2013.  http://www.uni-forst.gwdg.de/~wkurth/poster_fspm13_sm.pdf
+==== 2010 ====
+**Smolenová K., Hemmerling R., and W. Kurth. (2010).** Towards the reconstruction of historical gardens and parks using the techniques of FSPM. Poster on the “6th International Workshop on Functional-Structural Plant Modelling” (FSPM10), 12-17 September 2010, Davis, California, USA.   http://wwwuser.gwdg.de/%7Egroimp/grogra.de/publications/poster_fspm10_sm.pdf
+**Henke M., Buck-Sorlin G., and W. Kurth (2010).** FSPM-P: A general FSPM prototype model for application in crop modelling. Poster on the “6th International Workshop on Functional-Structural Plant Modelling” (FSPM10), 12-17 September 2010, Davis, California, USA.  http://wwwuser.gwdg.de/%7Egroimp/grogra.de/publications/poster_fspm10_he.pdf
+**Buck-Sorlin G., Sarlikioti V., Hemmerling R., and P.H. B. de Visser  (2010).** Comparison of two different light models using a virtual tomato crop. Poster on the “6th International Workshop on Functional-Structural Plant Modelling” (FSPM10), 12-17 September 2010, Davis, California, USA.
+=== 2004 ===
+**Buck-Sorlin G., Kniemeyer O., and W. Kurth. (2004).** Integrated grammar representation of genes, metabolites and morphology: The example of hordeomorphs, Poster on the “4th International Workshop on Functional-Structural Plant Models” (FSPM04), 07-11 June 2004, Montpellier, France.  http://wwwuser.gwdg.de/%7Egroimp/grogra.de/publications/fspm04_gbs_poster.pdf